SPECIAL NOTICE
D -- Partek License Renewal
- Notice Date
- 4/6/2011
- Notice Type
- Special Notice
- NAICS
- 511210
— Software Publishers
- Contracting Office
- Department of Health and Human Services, National Institutes of Health, National Institute of Environmental Health Sciences, Office of Acquisitions, Office of Management, 530 Davis Drive, Durham, North Carolina, 27713, United States
- ZIP Code
- 27713
- Solicitation Number
- DL2038506
- Archive Date
- 4/30/2012
- Point of Contact
- Deitra Lunney, Phone: 919-541-0387
- E-Mail Address
-
lunney@niehs.nih.gov
(lunney@niehs.nih.gov)
- Small Business Set-Aside
- N/A
- Description
- The National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC intends to negotiate on a sole source basis with Partek Inc., St. Louis, MO 63141 pursuant to 41 U.S.C.253(c)(1)--Only one responsible source and no other supplies or services will satisfy agency requirements. This procurement is for renewal of four (4) existing Floating Concurrent Subscription for Partek Genomics Suite Software for a one (1) year period. The Partek Genomics Suite Software provides a complete genomics analysis toolset. Summary of Features for Partek Genomics Suite: A) Genomic Features: - Affymetrix GeneChip-compatible for gene expression, exon expression, chromosomal copy number, tiling, and SNP analysis - Automatically connect to genomic databases and third-party applications, such as NetAffx, UCSC Genome Browser, Ingenuity's IPA, etc. - For Exon Analysis: import and normalization for exon analysis, exon on gene visualizations, special adaptations of mixed model AVONA to detect alternative splicing, and gene level summarization - For Chromosomal Copy Number Analysis: import from Affymetrix CNAT and CEL files, import LOH from CHP files, import from CNAG and dChip, copy number estimation for 10K, 100K, 500K, Genome-Wide Human SNP Array 5.0, and Genome-Wide Human SNP Array 6.0, normalize data with supplied reference or user supplied reference data, analyze copy number from genotype mapping, expression, exon, and tiling arrays, analyze copy number using SNP, copy number or both probe types for Affymetrix Genome-Wide SNP Array 5.0 and SNP Array 6.0, automatically detect regions of amplification and deletion, based on formal statistics - For SNP Analysis: calculate genotype calls using BRLMM, BRLMM-p, or Birdseed via Affymetrix Power Tools (APT), import genotype calls from Affymetrix CHP files or text files, perform whole genome chi square association tests, Hardy-Weinberg equilibrium and linkage disequilibrium, find and display regions of LOH, and calculate and display allele ratio - For Tiling Analysis: import from Affymetrix CEL files and analyze regulation data with HMM Region detection - Genomic smoothing though HMM, Gaussian, Mean Shift, and Median Smoothing methods - Custom Genomic Visualizations: Genome Viewer, Chromosome Viewer, M vs A plot, Volcano plot, and chip images in the spreadsheet B) Spreadsheet Features: - No limit to the number of rows or columns in the spreadsheet - Import from flat files, Excel, or any ODBC compliant database - Data filtering by rows or columns - Visualization includes scatter plot, histogram, dot plot, intensity plot, star plot, profile plot, box and whiskers, normal and uniform probability plots, Venn diagram, XY plot, and barchart - Graphic properties can be rendered by user-defined settings - Image output formats include GIF, TIFF, PNG, JPEG, PPM, and SVG - External link manager allows for user-defined third party connection preferences C) Statistical Features: - Summary statistics, measures of association - Data transformations including scaling, normalization, ranks and scores, smoothing, and distance and similarity measures - Parametric tests include one sample t-test, one sample z-test, two sample t-test (equal and unequal variance), ANOVA (N-way, repeated measures, mixed-model, ANCOVA, etc), Survival Analysis - Nonparametric test include Mann-Whitney, Kruskal-Wallis, Chi-Square, Fisher Exact, McNemar, Friedman, Quade, Kolmogorov-Smirnov, and multiple test corrections for p-values - Other analysis methods include false discovery rate, principal components analysis, multidimensional scaling, correspondence analysis, cluster analysis, similarity matching, predictive modeling, variable selection, K-nearest neighbor classifier, nearest centroid classifier, discriminant analysis, multi-layer perceptron, and multiple prototype classifier D) Software Features: - Inter-process communication - Tutorials and documentation - Flexible licensing options - Supported on Windows Vista/XP/2000, Linux and Intel based Macintosh. This notice of intent is not a request for competitive proposals; however, all responses received within 8 days from the date of publication of this synopsis will be considered by the Government. A determination by the Government not to compete this proposed contract action based upon responses to this notice is solely with the discretion of the Government. Information received will normally be considered for the purpose of determining whether to conduct a competitive procurement. If no affirmative responses are received within 8 days of this notice to determine whether a qualified source is more advantageous to the Government, the order will be issued to Partek, Inc. The NAICS Code/Size is 511210/$25 Million. This procurement is to be processed using Simplified Acquisition Procedures in conjunction with FAR Part 12 Commercial Item Acquisition of Commercial Items. There is no solicitation package available. For any questions regarding this announcement, please contact Dee Lunney via email lunney@niehs.nih.gov.
- Web Link
-
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(https://www.fbo.gov/spg/HHS/NIH/NIEHS/DL2038506/listing.html)
- Record
- SN02418753-W 20110408/110406234907-cf801804ecbcbda6f26e61bbea910132 (fbodaily.com)
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